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http://www.jgi.doe.gov/

Institute to advance genomics in support of the DOE missions related to clean energy generation and environmental characterization and cleanup. Supported by the DOE Office of Science, the DOE JGI unites the expertise at Lawrence Berkeley National Laboratory, Lawrence Livermore National Laboratory, and the HudsonAlpha Institute for Biotechnology. The facility provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.

Proper citation: DOE Joint Genome Institute (RRID:SCR_003045) Copy   

•   Source: SciCrunch Registry

https://www.caida.org/

Center aimes at promoting greater cooperation in engineering and maintenance of global Internet infrastructure, better manage ever increasing volume of digitally based information including security and network data analysis. Provides open access data and tools.

Proper citation: SDSC Center for Applied Internet Data Analysis (RRID:SCR_024638) Copy   

•   Source: SciCrunch Registry

https://opencontext.org/

Publishes documentation and data to make them discoverable and searchable on the Web. Publishing service archives data by integrating analyses, maps, media, and journals together. Open Context editors clean data and organize content. Every item receives unique identifier that allows citation of individual items. Your data publication receives DOI. Creative Commons licenses facilitate reuse. All Open Context data publications are preserved with California Digital Library.

Proper citation: Open Context (RRID:SCR_024604) Copy   

•   Source: SciCrunch Registry

https://online.kitp.ucsb.edu/

Most seminars, conferences, colloquia, and lectures at KITP since late 1997 have been archived on this website, in the form of slides, audio, video, and podcasts. Portal to foster scientific communication, education, and outreach.

Proper citation: Kavli Institute for Theoretical Physics Online Talks (RRID:SCR_024580) Copy   

•   Source: SciCrunch Registry

https://www.nceas.ucsb.edu/

Synthesis science center to help to transform ecology and environmental science to generate bigger insights. Leader in environmental data science, has led development of technological solutions to improve data access and management and efficiency of analyses, and helped set scientific standards in data ethics.

Proper citation: National Center for Ecological Analysis and Synthesis (RRID:SCR_024597) Copy   

•   Source: SciCrunch Registry

https://cega.berkeley.edu/

Network of world class researchers and innovators to improve lives of people living in poverty by generating insights and tools for decision makers backed by rigorous, inclusive, and transparent research. Hub for research, training and innovation headquartered at University of California, Berkeley.

Proper citation: Center for Effective Global Action (RRID:SCR_024639) Copy   

•   Source: SciCrunch Registry

http://datamares.org

Open source, and interactive platform to resolve trans disciplinary problems related to coastal and marine ecosystem. Data sharing and science communication portal holds amounts of fishery, reef, and mangrove data pertaining to Gulf of California and Mexico specific oceans, and delivers this information in interactive and easily digestible manner. Consistently expands library of datasets while improving functionality and overall usability of the platform. Facilitate access to scientific knowledge and data to promote transparency, education, and deeper understanding of Mexico’s ecosystems and their biodiversity to bridge gap between science and design process of conservation and resource management programs.

Proper citation: DataMares (RRID:SCR_024575) Copy   

•   Source: SciCrunch Registry

https://seismo.berkeley.edu/

Acts as part of statewide earthquake monitoring system, the California Integrated Seismic Network. Conducts essential research on earthquakes and solid earth processes while collecting and delivering high quality geophysical data. Data from these geophysical networks are recorded digitally and are archived at the Northern California Earthquake Data Center, which is located at the Berkeley Seismological Lab.

Proper citation: Berkeley Seismological Laboratory (RRID:SCR_024552) Copy   

•   Source: SciCrunch Registry

https://biocodecommons.org/

Platform provides resources for genomic observations from collection to analysis and publication. Works with standards community to ensure clear vocabularies and useful ontologies for biological resources and related assets. Biocode Commons is also collaborating on development of Biological Collections Ontology, working to better integrate ontologies, vocabularies, and relevant standards that are related to BCO.

Proper citation: Biocode Commons (RRID:SCR_024553) Copy   

•   Source: SciCrunch Registry

http://drugdesigndata.org

Project portal's database of protein-ligand data sets provided by pharmaceutical partners that provide atomic details of drug mechanisms that will be used to improve computer-aided drug-design methods and thus accelerate drug discovery. The project aims to help companies release the high-quality data they have generated, which has incredible value to researchers working to improve methods of computer-aided drug discovery. Everyone stands to benefit from the ability to develop new medications more quickly and inexpensively. What computational chemists globally are trying to do is to make faster, more accurate, more predictive programs to speed up the process. Part of their mission is to engage the community in these challenges to test newly developed predictive algorithms.

Proper citation: Drug Design Data Resource (RRID:SCR_000497) Copy   

•   Source: SciCrunch Registry

https://www.sfwmd.gov/our-work/cerp-project-planning

Platform provides framework for restoring, protecting and preserving the greater Everglades ecosystem. The plan is partnership between State of Florida and federal government.

Proper citation: Comprehensive Everglades Restoration Plan (RRID:SCR_024557) Copy   

•   Source: SciCrunch Registry

https://wifire.ucsd.edu/

Consortium of UC San Diego organizations and number of partnerships including university collaborators, industry partners, fire departments, utilities, State’s CalOES and CPUC. Develops science driven technologies with fire management community using collaborative workflows integrating science and AI. Provides real time fire modeling and predictions for firefighters. Harnesses emerging AI techniques to offer novel way to approach spatial heterogeneity and upgrading of data.

Proper citation: UCSD WIFIRE (RRID:SCR_024650) Copy   

•   Source: SciCrunch Registry

https://ucnrs.org/

Library of ecosystems throughout California. Most of the state’s major habitat types are represented, from coastal tidepools to inland deserts, and lush wetlands to redwood forests.

Proper citation: UC Natural Reserve System (RRID:SCR_024646) Copy   

•   Source: SciCrunch Registry

https://www.piscoweb.org/

Academic consortium that conducts research to advance understanding of the coastal ocean within the California Current Large Marine Ecosystem and inform management and policy.

Proper citation: Partnership for Interdisciplinary Studies of Coastal Oceans (RRID:SCR_024637) Copy   

•   Source: SciCrunch Registry

http://odc-sci.org

Portal for sharing spinal cord injury data from basic and clinical research to promote transparency, rigor and reproducibility. Community based repository for spinal cord injury research.

Proper citation: Open Data Commons for Spinal Cord Injury (RRID:SCR_016673) Copy   

•   Source: SciCrunch Registry

https://guides.library.ucdavis.edu/social-science-data

Portal provides information about social science data.

Proper citation: UC Davis Social Science Data Service (RRID:SCR_024644) Copy   

•   Source: SciCrunch Registry

https://escholarship.org/uc/medicalhumanities

Faculty directors from UC Berkeley, UC Davis, UC Irvine, and UCSF support collaborative student research projects, publications, and resources with the aim to have substantial record of achievement and innovation pursued through allocated research funding to support humanism in medicine and health science education.

Proper citation: UC Medical Humanities Consortium (RRID:SCR_024645) Copy   

•   Source: SciCrunch Registry

http://crbs.ucsd.edu/

CRBS is a UCSD organized research unit (ORU) that exists to provide human resources, high technology equipment, and administrative services to researchers engaged in fundamental research on cell structure and function relationships in central nervous system processes, cardiovascular networking, and muscular contraction through multiple scales and modalities. CRBS scientists investigate these processes through invention, refinement, and deployment of sophisticated technologies, especially: - High-powered electron microscopes that reveal three-dimensional cell structures - State-of-the-art X-ray crystallography and magnetic resonance analysis that provide detail on protein structures at high-resolution - Laser-scanning and confocal light microscopes that reveal molecules tagged with fluorescent markers as they traffic within cells and pass transfer signals within and between cells - High performance computing and grid-based integration of distributed data CRBS facilitates an interdisciplinary infrastructure in which people from biology, medicine, chemistry, and physics can work with those from computer science and information technologies in collaborative research. Researchers share interests in the study of complex biological systems at many scales, from the structures of enzymes, proteins, and the body's chemical communications network at atomic and molecular levels, to an organism's physiology, strength, and support at cellular and tissue levels. The CRBS infrastructure integrates resources for high-performance computing, visualization, and database technologies, and the grid-integration of large amounts of archival storage data. The California Institute for Telecommunications and Information Technology (Cal-IT2) and the San Diego Supercomputer Center (SDSC) are collaborators in simulating the activity of biological systems, analyzing the results, and organizing the growing storehouse of biological information. CRBS is an entity evolving as research evolves. It forges interactions with biotechnology and biocomputing companies for technology transfer. Interaction, collaboration, and multiscale research produce new perspectives, reveal fruitful research topics, lead to the development of new technologies and drugs, and train a new generation of researchers in biological systems. Sponsors: CRBS is supported by the University of California at San Diego.

Proper citation: Center for Research in Biological Systems (RRID:SCR_002666) Copy   

•   Source: SciCrunch Registry

http://idash.ucsd.edu/

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 6, 2023. National Center for Biomedical Computing (NCBC) that develops new algorithms, opensource tools, computational infrastructure, and services for biomedical and behavioral researchers nationwide to promote the secure sharing and consuming of biomedical and behavioral resources (software, data, and computing systems) with iDASH collaborators. The center addresses fundamental challenges to research progress by providing a secure, privacypreserving environment in which researchers can analyze genomic, transcriptomic, clinical, behavioral, and social data relevant to health. Three driving biological projects in iDASH (Molecular Phenotyping of Kawasaki Disease, Post-Marketing Surveillance of Hematologic Medications, and Individualized Intervention to Enhance Physical Activity) span the molecular-individualpopulation spectrum, and they will motivate, inform, and support tool development. iDASH will collaborate with other NCBCs and will disseminate tools via annual workshops, presentations at major conferences, and scientific publications.

Proper citation: iDASH (RRID:SCR_003524) Copy   

•   Source: SciCrunch Registry

https://www.ngsci.org/

Nightingale provides large deidentified medical data sets on cloud platform for healthcare AI research and education worldwide. Works closely with health systems around the world to create and curate datasets of medical images linked to ground-truth labels. Deidentifies data and makes it available for non-profit research on cloud infrastructure.

Proper citation: Nightingale Open Science (RRID:SCR_024598) Copy   

•   Source: SciCrunch Registry