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Divergent Evolutionary Rates of Primate Brain Regions as Revealed by Genomics and Transcriptomics.

Genome biology and evolution | 2024

Although the primate brain contains numerous functionally distinct structures that have experienced diverse genetic changes during the course of evolution and development, these changes remain to be explored in detail. Here we utilize two classic metrics from evolutionary biology, the evolutionary rate index (ERI) and the transcriptome age index (TAI), to investigate the evolutionary alterations that have occurred in each area and developmental stage of the primate brain. We observed a higher evolutionary rate for those genes expressed in the non-cortical areas during primate evolution, particularly in human, with the highest rate of evolution being exhibited at brain developmental stages between late infancy and early childhood. Further, the transcriptome age of the non-cortical areas was lower than that of the cerebral cortex, with the youngest age apparent at brain developmental stages between late infancy and early childhood. Our exploration of the evolutionary patterns manifest in each brain area and developmental stage provides important reference points for further research into primate brain evolution.

Pubmed ID: 38314830 RIS Download

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Associated grants

  • Agency: Ministry of Science and Technology of the People's Republic of China,
    Id: SQ2023YFA1800025
  • Agency: CAS Light of West China Program,
    Id: xbzg-zdsys-202213
  • Agency: Yunnan Provincial Department of Science and Technology,
    Id: 2019FA008

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STAR (tool)

RRID:SCR_004463

Software performing alignment of high-throughput RNA-seq data. Aligns RNA-seq reads to reference genome using uncompressed suffix arrays.

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