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Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub.

Emily Howerton | Lucie Contamin | Luke C Mullany | Michelle Qin | Nicholas G Reich | Samantha Bents | Rebecca K Borchering | Sung-Mok Jung | Sara L Loo | Claire P Smith | John Levander | Jessica Kerr | J Espino | Willem G van Panhuis | Harry Hochheiser | Marta Galanti | Teresa Yamana | Sen Pei | Jeffrey Shaman | Kaitlin Rainwater-Lovett | Matt Kinsey | Kate Tallaksen | Shelby Wilson | Lauren Shin | Joseph C Lemaitre | Joshua Kaminsky | Juan Dent Hulse | Elizabeth C Lee | Clif McKee | Alison Hill | Dean Karlen | Matteo Chinazzi | Jessica T Davis | Kunpeng Mu | Xinyue Xiong | Ana Pastore Y Piontti | Alessandro Vespignani | Erik T Rosenstrom | Julie S Ivy | Maria E Mayorga | Julie L Swann | Guido España | Sean Cavany | Sean Moore | Alex Perkins | Thomas Hladish | Alexander Pillai | Kok Ben Toh | Ira Longini | Shi Chen | Rajib Paul | Daniel Janies | Jean-Claude Thill | Anass Bouchnita | Kaiming Bi | Michael Lachmann | Spencer Fox | Lauren Ancel Meyers | UT COVID-19 Modeling Consortium | Ajitesh Srivastava | Przemyslaw Porebski | Srini Venkatramanan | Aniruddha Adiga | Bryan Lewis | Brian Klahn | Joseph Outten | Benjamin Hurt | Jiangzhuo Chen | Henning Mortveit | Amanda Wilson | Madhav Marathe | Stefan Hoops | Parantapa Bhattacharya | Dustin Machi | Betsy L Cadwell | Jessica M Healy | Rachel B Slayton | Michael A Johansson | Matthew Biggerstaff | Shaun Truelove | Michael C Runge | Katriona Shea | Cécile Viboud | Justin Lessler
medRxiv : the preprint server for health sciences | 2023

Our ability to forecast epidemics more than a few weeks into the future is constrained by the complexity of disease systems, our limited ability to measure the current state of an epidemic, and uncertainties in how human action will affect transmission. Realistic longer-term projections (spanning more than a few weeks) may, however, be possible under defined scenarios that specify the future state of critical epidemic drivers, with the additional benefit that such scenarios can be used to anticipate the comparative effect of control measures. Since December 2020, the U.S. COVID-19 Scenario Modeling Hub (SMH) has convened multiple modeling teams to make 6-month ahead projections of the number of SARS-CoV-2 cases, hospitalizations and deaths. The SMH released nearly 1.8 million national and state-level projections between February 2021 and November 2022. SMH performance varied widely as a function of both scenario validity and model calibration. Scenario assumptions were periodically invalidated by the arrival of unanticipated SARS-CoV-2 variants, but SMH still provided projections on average 22 weeks before changes in assumptions (such as virus transmissibility) invalidated scenarios and their corresponding projections. During these periods, before emergence of a novel variant, a linear opinion pool ensemble of contributed models was consistently more reliable than any single model, and projection interval coverage was near target levels for the most plausible scenarios (e.g., 79% coverage for 95% projection interval). SMH projections were used operationally to guide planning and policy at different stages of the pandemic, illustrating the value of the hub approach for long-term scenario projections.

Pubmed ID: 37461674 RIS Download

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Associated grants

  • Agency: ACL HHS, United States
    Id: U01IP001137
  • Agency: NIGMS NIH HHS, United States
    Id: U24 GM132013
  • Agency: NIGMS NIH HHS, United States
    Id: R01 GM140564
  • Agency: NCATS NIH HHS, United States
    Id: UL1 TR002489
  • Agency: NIGMS NIH HHS, United States
    Id: R01 GM109718
  • Agency: NCIRD CDC HHS, United States
    Id: U01 IP001136
  • Agency: NCIRD CDC HHS, United States
    Id: U01 IP001137
  • Agency: CDC HHS, United States
    Id: NU38OT000297
  • Agency: ACL HHS, United States
    Id: U01IP001136
  • Agency: NIAID NIH HHS, United States
    Id: R01 AI151176

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outbreak.info (tool)

RRID:SCR_018282

Resource to aggregate all outbreak information into single location during outbreaks of emerging diseases, such as COVID-19.

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