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Endogenous spacing enables co-processing of microRNAs and efficient combinatorial RNAi.

Cell reports methods | 2022

We present Multi-miR, a microRNA-embedded shRNA system modeled after endogenous microRNA clusters that enables simultaneous expression of up to three or four short hairpin RNAs (shRNAs) from a single promoter without loss of activity, enabling robust combinatorial RNA interference (RNAi). We further developed complementary all-in-one vectors that are over one log-scale more sensitive to doxycycline-mediated activation in vitro than previous methods and resistant to shRNA inactivation in vivo. We demonstrate the utility of this system for intracranial expression of shRNAs in a glioblastoma model. Additionally, we leverage this platform to target the redundant RAF signaling node in a mouse model of KRAS-mutant cancer and show that robust combinatorial synthetic lethality efficiently abolishes tumor growth.

Pubmed ID: 35880017 RIS Download

Associated grants

  • Agency: NCI NIH HHS, United States
    Id: T32 CA211036
  • Agency: NCI NIH HHS, United States
    Id: P30 CA030199
  • Agency: NCI NIH HHS, United States
    Id: P30 CA008748
  • Agency: NIGMS NIH HHS, United States
    Id: R35 GM143124
  • Agency: NCI NIH HHS, United States
    Id: R01 CA237536
  • Agency: NIGMS NIH HHS, United States
    Id: K99 GM118909
  • Agency: NIGMS NIH HHS, United States
    Id: R00 GM118909

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HEK293T (tool)

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