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Development of a Pipeline for Adverse Drug Reaction Identification in Clinical Notes: Word Embedding Models and String Matching.

JMIR medical informatics | 2022

Knowledge about adverse drug reactions (ADRs) in the population is limited because of underreporting, which hampers surveillance and assessment of drug safety. Therefore, gathering accurate information that can be retrieved from clinical notes about the incidence of ADRs is of great relevance. However, manual labeling of these notes is time-consuming, and automatization can improve the use of free-text clinical notes for the identification of ADRs. Furthermore, tools for language processing in languages other than English are not widely available.

Pubmed ID: 35076407 RIS Download

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word2vec (tool)

RRID:SCR_014776

Software tool which provides implementation of the continuous bag-of-words and skip-gram architectures for computing vector representations of words. These representations can be used in many natural language processing applications and for further research. It takes a text corpus as input and produces the word vectors as output. It first constructs a vocabulary from the training text data and then learns vector representation of words. The resulting word vector file can be used as features in natural language processing and machine learning applications.

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