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Defining the ATPome reveals cross-optimization of metabolic pathways.

Nature communications | 2020

Disrupted energy metabolism drives cell dysfunction and disease, but approaches to increase or preserve ATP are lacking. To generate a comprehensive metabolic map of genes and pathways that regulate cellular ATP-the ATPome-we conducted a genome-wide CRISPR interference/activation screen integrated with an ATP biosensor. We show that ATP level is modulated by distinct mechanisms that promote energy production or inhibit consumption. In our system HK2 is the greatest ATP consumer, indicating energy failure may not be a general deficiency in producing ATP, but rather failure to recoup the ATP cost of glycolysis and diversion of glucose metabolites to the pentose phosphate pathway. We identify systems-level reciprocal inhibition between the HIF1 pathway and mitochondria; glycolysis-promoting enzymes inhibit respiration even when there is no glycolytic ATP production, and vice versa. Consequently, suppressing alternative metabolism modes paradoxically increases energy levels under substrate restriction. This work reveals mechanisms of metabolic control, and identifies therapeutic targets to correct energy failure.

Pubmed ID: 32859923 RIS Download

Research resources used in this publication

None found

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Associated grants

  • Agency: NICHD NIH HHS, United States
    Id: R01 HD072455
  • Agency: NINDS NIH HHS, United States
    Id: R01 NS091902
  • Agency: NICHD NIH HHS, United States
    Id: K12 HD000850
  • Agency: NCRR NIH HHS, United States
    Id: S10 RR028962
  • Agency: NIGMS NIH HHS, United States
    Id: DP2 GM119139
  • Agency: NIAID NIH HHS, United States
    Id: P30 AI027763
  • Agency: NIA NIH HHS, United States
    Id: F32 AG063457
  • Agency: NCI NIH HHS, United States
    Id: U54 CA196519
  • Agency: NIH HHS, United States
    Id: S10 OD016387

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