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Structural and Functional Characterization of Phosphatidylinositol-Phosphate Biosynthesis in Mycobacteria.

Journal of molecular biology | 2020

In mycobacteria, phosphatidylinositol (PI) acts as a common lipid anchor for key components of the cell wall, including the glycolipids phosphatidylinositol mannoside, lipomannan, and lipoarabinomannan. Glycolipids in Mycobacterium tuberculosis, the causative agent of tuberculosis, are important virulence factors that modulate the host immune response. The identity-defining step in PI biosynthesis in prokaryotes, unique to mycobacteria and few other bacterial species, is the reaction between cytidine diphosphate-diacylglycerol and inositol-phosphate to yield phosphatidylinositol-phosphate, the immediate precursor to PI. This reaction is catalyzed by the cytidine diphosphate-alcohol phosphotransferase phosphatidylinositol-phosphate synthase (PIPS), an essential enzyme for mycobacterial viability. Here we present structures of PIPS from Mycobacterium kansasii with and without evidence of donor and acceptor substrate binding obtained using a crystal engineering approach. PIPS from Mycobacterium kansasii is 86% identical to the ortholog from M. tuberculosis and catalytically active. Functional experiments guided by our structural results allowed us to further characterize the molecular determinants of substrate specificity and catalysis in a new mycobacterial species. This work provides a framework to strengthen our understanding of phosphatidylinositol-phosphate biosynthesis in the context of mycobacterial pathogens.

Pubmed ID: 32389689 RIS Download

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Associated grants

  • Agency: NCRR NIH HHS, United States
    Id: S10 RR029205
  • Agency: NIGMS NIH HHS, United States
    Id: R35 GM132120
  • Agency: NCRR NIH HHS, United States
    Id: P41 RR015301
  • Agency: NIGMS NIH HHS, United States
    Id: K99 GM123228
  • Agency: NIGMS NIH HHS, United States
    Id: P41 GM116799
  • Agency: NIH HHS, United States
    Id: S10 OD021527
  • Agency: NIGMS NIH HHS, United States
    Id: R01 GM111980
  • Agency: NIGMS NIH HHS, United States
    Id: P30 GM124165
  • Agency: NIAID NIH HHS, United States
    Id: R21 AI119672
  • Agency: NIGMS NIH HHS, United States
    Id: R00 GM123228

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Phenix (tool)

RRID:SCR_014224

A Python-based software suite for the automated determination of molecular structures using X-ray crystallography and other methods. Phenix includes programs for assessing data quality, experimental phasing, molecular replacement, model building, structure refinement, and validation. It also includes tools for reflection data and creating maps and models. Phenix can also be used for neutron crystallography. Tutorials and examples are available in the documentation tab.

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