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Diurnal regulation of SDG2 and JMJ14 by circadian clock oscillators orchestrates histone modification rhythms in Arabidopsis.

Genome biology | 2019

Circadian rhythms modulate growth and development in all organisms through interlocking transcriptional-translational feedback loops. The transcriptional loop involves chromatin modifications of central circadian oscillators in mammals and plants. However, the molecular basis for rhythmic epigenetic modifications and circadian regulation is poorly understood.

Pubmed ID: 31429787 RIS Download

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Associated grants

  • Agency: NIGMS NIH HHS, United States
    Id: R01 GM109076
  • Agency: Foundation for the National Institutes of Health, International
    Id: GM109076

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This is a list of tools and resources that we have found mentioned in this publication.


ChIP-seq (tool)

RRID:SCR_001237

Set of software modules for performing common ChIP-seq data analysis tasks across the whole genome, including positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-poor regions. The tools are designed to be simple, fast and highly modular. Each program carries out a well defined data processing procedure that can potentially fit into a pipeline framework. ChIP-Seq is also freely available on a Web interface.

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DAVID (tool)

RRID:SCR_001881

Bioinformatics resource system including web server and web service for functional annotation and enrichment analyses of gene lists. Consists of comprehensive knowledgebase and set of functional analysis tools. Includes gene centered database integrating heterogeneous gene annotation resources to facilitate high throughput gene functional analysis.

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Arabidopsis Biological Resource Center (tool)

RRID:SCR_008136

The mission of the Arabidopsis Biological Resource Center (ABRC) is to acquire, preserve and distribute seed and DNA resources that are useful to the Arabidopsis research community. More than 100,000 stocks are shipped annually to researchers in more than 60 countries, and modest fees for stocks are charged. The ABRC database functions and ordering system are incorporated into The Arabidopsis Information Resource (TAIR). Researchers can obtain information about Arabidopsis, perform stock searches, order stocks, and view current and past orders. Sponsors: ABRC is supported by the National Science Foundation under Grant No. 0542034.

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