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Metabolic Characterization of the Common Marmoset (Callithrix jacchus).

PloS one | 2015

High-resolution metabolomics has created opportunity to integrate nutrition and metabolism into genetic studies to improve understanding of the diverse radiation of primate species. At present, however, there is very little information to help guide experimental design for study of wild populations. In a previous non-targeted metabolomics study of common marmosets (Callithrix jacchus), Rhesus macaques, humans, and four non-primate mammalian species, we found that essential amino acids (AA) and other central metabolites had interspecies variation similar to intraspecies variation while non-essential AA, environmental chemicals and catabolic waste products had greater interspecies variation. The present study was designed to test whether 55 plasma metabolites, including both nutritionally essential and non-essential metabolites and catabolic products, differ in concentration in common marmosets and humans. Significant differences were present for more than half of the metabolites analyzed and included AA, vitamins and central lipid metabolites, as well as for catabolic products of AA, nucleotides, energy metabolism and heme. Three environmental chemicals were present at low nanomolar concentrations but did not differ between species. Sex and age differences in marmosets were present for AA and nucleotide metabolism and warrant additional study. Overall, the results suggest that quantitative, targeted metabolomics can provide a useful complement to non-targeted metabolomics for studies of diet and environment interactions in primate evolution.

Pubmed ID: 26581102 RIS Download

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Associated grants

  • Agency: NIEHS NIH HHS, United States
    Id: ES019776
  • Agency: NIEHS NIH HHS, United States
    Id: T32 ES012870
  • Agency: NIA NIH HHS, United States
    Id: P01 AG001751
  • Agency: NIH HHS, United States
    Id: S10 OD018006
  • Agency: NIEHS NIH HHS, United States
    Id: ES023485
  • Agency: NIEHS NIH HHS, United States
    Id: R01 ES023485
  • Agency: NHLBI NIH HHS, United States
    Id: P20 HL113451
  • Agency: NHLBI NIH HHS, United States
    Id: HL113451
  • Agency: NIA NIH HHS, United States
    Id: R01 AG038746
  • Agency: NIEHS NIH HHS, United States
    Id: R21 ES025632
  • Agency: NIH HHS, United States
    Id: OD018006
  • Agency: NIEHS NIH HHS, United States
    Id: P30 ES019776
  • Agency: NIA NIH HHS, United States
    Id: AG038746
  • Agency: NIA NIH HHS, United States
    Id: P30 AG013280
  • Agency: NIEHS NIH HHS, United States
    Id: ES 025632

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HMDB (tool)

RRID:SCR_007712

Curated collection of human metabolite and human metabolism data which contains records for endogenous metabolites, with each metabolite entry containing detailed chemical, physical, biochemical, concentration, and disease information. This is further supplemented with thousands of NMR and MS spectra collected on purified reference metabolites.

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xMSanalyzer (tool)

RRID:SCR_012144

A software package of utilities for data extraction, quality control assessment, detection of overlapping and unique metabolites in multiple datasets, and batch annotation of metabolites. xMSanalyzer comprises of utilities that can be classified into five main modules: 1) merging apLCMS or XCMS sample processing results from multiple sets of parameter settings, 2) evaluation of sample quality, feature consistency, and batch-effect, 3) feature matching, and 4) characterization of m/z using KEGG REST; 5) Batch-effect correction using ComBat.

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