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EMDataBank unified data resource for 3DEM.

Nucleic acids research | 2016

Three-dimensional Electron Microscopy (3DEM) has become a key experimental method in structural biology for a broad spectrum of biological specimens from molecules to cells. The EMDataBank project provides a unified portal for deposition, retrieval and analysis of 3DEM density maps, atomic models and associated metadata (emdatabank.org). We provide here an overview of the rapidly growing 3DEM structural data archives, which include maps in EM Data Bank and map-derived models in the Protein Data Bank. In addition, we describe progress and approaches toward development of validation protocols and methods, working with the scientific community, in order to create a validation pipeline for 3DEM data.

Pubmed ID: 26578576 RIS Download

Research resources used in this publication

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Associated grants

  • Agency: Wellcome Trust, United Kingdom
    Id: 088944
  • Agency: Wellcome Trust, United Kingdom
    Id: 104948
  • Agency: NIGMS NIH HHS, United States
    Id: R01GM079429
  • Agency: Biotechnology and Biological Sciences Research Council, United Kingdom
    Id: BB/G022577/1
  • Agency: Medical Research Council, United Kingdom
    Id: MR/L007835/1
  • Agency: Medical Research Council, United Kingdom
    Id: MR/L007835
  • Agency: NIGMS NIH HHS, United States
    Id: P41 GM103832
  • Agency: NIGMS NIH HHS, United States
    Id: R01 GM079429

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EMDataResource.org (tool)

RRID:SCR_003207

Portal for deposition and retrieval of cryo electron microscopy (3DEM) density maps, atomic models, and associated metadata. Global resource for 3 Dimensional Electron Microscopy structure data archiving and retrieval, news, events, software tools, data standards, validation methods.

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