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Is it time to re-prioritize neuroimaging databases and digital repositories?

NeuroImage | 2009

The development of in vivo brain imaging has lead to the collection of large quantities of digital information. In any individual research article, several tens of gigabytes-worth of data may be represented-collected across normal and patient samples. With the ease of collecting such data, there is increased desire for brain imaging datasets to be openly shared through sophisticated databases. However, very often the raw and pre-processed versions of these data are not available to researchers outside of the team that collected them. A range of neuroimaging databasing approaches has streamlined the transmission, storage, and dissemination of data from such brain imaging studies. Though early sociological and technical concerns have been addressed, they have not been ameliorated altogether for many in the field. In this article, we review the progress made in neuroimaging databases, their role in data sharing, data management, potential for the construction of brain atlases, recording data provenance, and value for re-analysis, new publication, and training. We feature the LONI IDA as an example of an archive being used as a source for brain atlas workflow construction, list several instances of other successful uses of image databases, and comment on archive sustainability. Finally, we suggest that, given these developments, now is the time for the neuroimaging community to re-prioritize large-scale databases as a valuable component of brain imaging science.

Pubmed ID: 19371790 RIS Download

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Associated grants

  • Agency: NCRR NIH HHS, United States
    Id: 5 P41 RR013642
  • Agency: NIMH NIH HHS, United States
    Id: RC1 MH088194-02
  • Agency: NIMH NIH HHS, United States
    Id: RC1 MH088194
  • Agency: NIMH NIH HHS, United States
    Id: RC1 MH088194-01
  • Agency: NCRR NIH HHS, United States
    Id: P41 RR013642
  • Agency: NCRR NIH HHS, United States
    Id: P41 RR013642-11

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This is a list of tools and resources that we have found mentioned in this publication.


NeuroImaging Tools and Resources Collaboratory (NITRC) (tool)

RRID:SCR_003430

Software repository for comparing structural (MRI) and functional neuroimaging (fMRI, PET, EEG, MEG) software tools and resources. NITRC collects and points to standardized information about structural or functional neuroimaging tool or resource.

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SPM (tool)

RRID:SCR_007037

Software package for analysis of brain imaging data sequences. Sequences can be a series of images from different cohorts, or time-series from same subject. Current release is designed for analysis of fMRI, PET, SPECT, EEG and MEG.

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Neuroscience Database Gateway (tool)

RRID:SCR_007297

THIS RESOURCE IS NO LONGER IN SERVICE, documented on September 06, 2013. Resource aimed at promoting awareness and facilitating access to online neuroscience databases.

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National Alzheimer's Coordinating Center (tool)

RRID:SCR_007327

A clinical research, neuropathological research and collaborative research database that uses data collected from 29 NIA-funded Alzheimer's Disease Centers (ADCs). The database consists of several datasets, and searches may be done on the entire database or on individual datasets. Any researcher, whether affiliated with an ADC or not, may request a data file for analysis or aggregate data tables. Requested aggregate data tables are produced and returned as soon as the queue allows (usually within 1-3 days depending on the complexity).

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