URL: http://www.bioconductor.org/packages/devel/bioc/html/deepSNV.html
Proper Citation: deepSNV (RRID:SCR_006214)
Description: Software package that provides quantitative variant callers for detecting subclonal mutations in ultra-deep (>=100x coverage) sequencing experiments. The algorithm is used for a comparative setup with a control experiment of the same loci and uses a beta-binomial model and a likelihood ratio test to discriminate sequencing errors and subclonal SNVs (single nucleotide variants).
Abbreviations: deepSNV
Synonyms: deepSNV - Detection of subclonal SNVs in deep sequencing experiments
Resource Type: software resource
Defining Citation: PMID:24443148
Keywords: data import, genetic variability, genetics, snp, sequencing, single nucleotide variant, bio.tools
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