URL: https://github.com/fhaive/epitope_generation_gateway
Proper Citation: Epitope Generation Gateway (RRID:SCR_028792)
Description: Software modular Snakemake pipeline for personalised neonatigen discovery and prioritisation using Patient Specific Functional Interaction Networks. Used for identifying and prioritizing personalized tumor neoantigens from DNA and RNA sequencing data. It detects candidate epitopes arising from somatic variants, gene fusions, and alternative-splicing events, and integrates HLA binding, expression, gene essentiality, and patient-specific gene co-expression network features to rank biologically relevant vaccine candidates.
Synonyms: Epitope Generation Gateway (EGG)
Resource Type: software resource, software toolkit, source code
Keywords: Snakemake pipeline, personalised neonatigen discovery and prioritisation, Patient Specific Functional Interaction Networks,
Availability: Free, Available for download, Freely available
Resource Name: Epitope Generation Gateway
Resource ID: SCR_028792
Expand AllWe found {{ ctrl2.mentions.all_count }} mentions in open access literature.
We have not found any literature mentions for this resource.
We are searching literature mentions for this resource.
Most recent articles:
{{ mention._source.dc.creators[0].familyName }} {{ mention._source.dc.creators[0].initials }}, et al. ({{ mention._source.dc.publicationYear }}) {{ mention._source.dc.title }} {{ mention._source.dc.publishers[0].name }}, {{ mention._source.dc.publishers[0].volume }}({{ mention._source.dc.publishers[0].issue }}), {{ mention._source.dc.publishers[0].pagination }}. (PMID:{{ mention._id.replace('PMID:', '') }})
Check
for resource mentions.
A list of researchers who have used the resource and an author search tool
Find mentions based on location
{{ ctrl2.mentions.errors.location }}
A list of researchers who have used the resource and an author search tool. This is available for resources that have literature mentions.
No rating or validation information has been found for Epitope Generation Gateway.
No alerts have been found for Epitope Generation Gateway.
Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
