URL: https://github.com/open2c/cooltools
Proper Citation: cooltools (RRID:SCR_026118)
Description: Software suite of computational tools that enables flexible, scalable, and reproducible analysis of high-resolution contact frequency data. Provides suite of computational tools with paired python API and command line access, which facilitates workflows either on high-performance computing clusters or via custom analysis notebooks. As part of the Open2C ecosystem, cooltools also provides detailed introductions to key concepts in Hi-C-data analysis with interactive notebook documentation.
Resource Type: software resource, software toolkit, source code
Defining Citation: PMID:38709825
Keywords: enables reproducible analysis, high-resolution contact frequency data, paired python API,
Funding: NHGRI R01 HG003143; NHGRI UM1 HG011536; NIGMS R35 GM143116
Availability: Free, Available for download, Freely available
Resource Name: cooltools
Resource ID: SCR_026118
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
