URL: https://bioconductor.org/packages/RcisTarget/
Proper Citation: RcisTarget (RRID:SCR_024860)
Description: Software R package to identify transcription factor binding motifs over represented on gene list. RcisTarget selects DNA motifs that are significantly over represented in surroundings of transcription start site of genes in gene-set, then annotates to TFs and those that have high Normalized Enrichment Score are retained and than candidate target genes are predicted. Used to identify transcription factor binding motifs enriched on list of genes or genomic regions.
Resource Type: software resource, software toolkit
Keywords: identify transcription factor binding motifs, list of genes, genomic regions, candidate target genes prediction,
Availability: Free, Available for download, Freely available
Resource Name: RcisTarget
Resource ID: SCR_024860
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
