URL: https://sourceforge.net/projects/placnet/
Proper Citation: Placnet (RRID:SCR_024176)
Description: Software Perl tools for plasmid analysis in NGS projects.Identifies, visualizes and analyzes plasmids in WGS projects by creating a network of contig interactions, thus allowing comprehensive plasmid analysis within WGS datasets.Optimized to work with Illumina sequences but it also works with 454, Iontorrent or any of the actual sequence technologies. The input of placnet is a set of contigs and one or more SAM files with the mapping of the reads against the contigs. Placnet obtains a set of files, easily opened on Cytoscape software or other network tools.
Synonyms: plasmid constellation networks, placnet
Resource Type: software toolkit, software resource, software library
Defining Citation: PMID:25522143
Keywords: plasmid constellation networks, identifies splasmids, visualizes and analyzes plasmids, WGS projects, creating network of contig interactions, comprehensive plasmid analysis within WGS datasets,
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