URL: https://github.com/andersen-lab/ivar
Proper Citation: iVar (RRID:SCR_024045)
Description: Software package for viral amplicon based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar.Contains intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates.Following functions are implemented in iVar: trimming of primers and low-quality bases; consensus calling; variant calling both iSNVs and insertions/deletions; identifying mismatches to primer sequences and excluding the corresponding reads from alignment files.
Synonyms: ivar
Resource Type: software resource, software toolkit
Defining Citation: PMID:30621750
Keywords: call iSNVs from viral sequencing data, viral amplicon based sequencing, call iSNVs and consensus sequences from viral sequencing data, call iSNVs
Availability: Free, Available for download, Freely available,
Resource Name: iVar
Resource ID: SCR_024045
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
