URL: https://github.com/andersen-lab/ivar
Proper Citation: iVar (RRID:SCR_024045)
Description: Software package for viral amplicon based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar.Contains intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates.Following functions are implemented in iVar: trimming of primers and low-quality bases; consensus calling; variant calling both iSNVs and insertions/deletions; identifying mismatches to primer sequences and excluding the corresponding reads from alignment files.
Synonyms: ivar
Resource Type: software toolkit, software resource
Defining Citation: PMID:30621750
Keywords: call iSNVs from viral sequencing data, viral amplicon based sequencing, call iSNVs and consensus sequences from viral sequencing data, call iSNVs
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