URL: https://github.com/AstraZeneca-NGS/VarDictJava
Proper Citation: VarDict (RRID:SCR_023658)
Description: Software tool as variant caller for both single and paired sample variant calling from BAM files. Implements amplicon bias aware variant calling from targeted sequencing experiments, rescue of long indels by realigning bwa soft clipped reads.Novel and versatile variant caller for next generation sequencing in cancer research.
Resource Type: software application, software resource
Defining Citation: PMID:27060149
Keywords: variant caller, BAM files, amplicon bias aware variant calling, sequencing experiments, next generation sequencing, long indels,
Funding: AstraZeneca
Availability: Free, Available for download, Freely available
Resource Name: VarDict
Resource ID: SCR_023658
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
