URL: https://github.com/Nanostring-Biostats/GeomxTools/
Proper Citation: NanoString GeoMx Tools (RRID:SCR_023424)
Description: Software package contains tools for analyzing data from NanoString GeoMx Digital Spatial Profiler. Provides functions to read, quality control and normalize starting from Nanostring DCC and PKC files generated from NanoString GeoMx DSP. Contains definition of NanoStringGeoMxSet class which inherits from Biobase’s ExpressionSet class and NanoStringRCCSet class.
Synonyms: GeoMxTools
Resource Type: data analysis software, data processing software, software application, software resource
Keywords: NanoString GeoMx Digital Spatial Profiler, Nanostring DCC, PKC files, NanoString GeoMx DSP, Biobase ExpressionSet class, NanoStringRCCSet class,
Availability: Free, Available for download, Freely available
Resource Name: NanoString GeoMx Tools
Resource ID: SCR_023424
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
