URL: https://azimuth.hubmapconsortium.org/
Proper Citation: Azimuth (RRID:SCR_021084)
Description: Web application that uses annotated reference dataset to automate processing, analysis, and interpretation of new single cell RNA-seq experiment. Azimuth leverages reference based mapping, pipeline that inputs counts matrix of gene expression in single cells, and performs normalization, visualization, cell annotation, and differential expression. All results can be explored within the app, and easily downloaded for additional downstream analysis.
Resource Type: web application, software resource
Defining Citation: DOI:10.1101/2020.10.12.335331
Keywords: HubMap, BICCN, biomarker discovery, molecular reference maps, annotated reference dataset, automate processing, automate analysis, new single cell RNA-seq experiment interpretation
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