URL: https://www.archrproject.com/
Proper Citation: ArchR (RRID:SCR_020982)
Description: Software R package for processing and analyzing single-cell ATAC-seq data. Used for integrative single cell chromatin accessibility analysis.Provides intuitive, user focused interface for complex single cell analysis, including doublet removal, single cell clustering and cell type identification, unified peak set generation, cellular trajectory identification, DNA element-to-gene linkage, transcription factor footprinting, mRNA expression level prediction from chromatin accessibility and multi-omic integration with single-cell RNA sequencing.
Resource Type: data analysis software, data processing software, software application, software resource, software toolkit
Defining Citation: PMID:33633365
Keywords: single-cell ATAC-seq data analysis, single-cell ATAC-seq data processing, single cell chromatin accessibility analysis, doublet removal, single cell clustering, cell type identification, unified peak set generation, cellular trajectory identification, transcription factor footprinting
Funding: American Society of Hematology Scholar Award ; Defense Advanced Research Project Agency ; International Collaborative Award ; NCI R35 CA209919; NCI U2C CA233311; NHGRI RM1 HG007735; NHGRI UM1 HG009436; NHGRI UM1 HG009442; NIAID U19 AI057266; NIA K99 AG059918; Ray and Dagmar Dolby Family Fund ; Stanford Cancer Institute-Goldman Sachs Foundation Cancer Research Award
Availability: Free, Available for download, Freely available
Resource Name: ArchR
Resource ID: SCR_020982
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Source: SciCrunch Registry (RRID:SCR_005400)
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