URL: https://github.com/broadinstitute/warp/tree/master/pipelines/skylab/smartseq2_multisample
Proper Citation: Smart-seq2 Multi-Sample Pipeline (RRID:SCR_018920)
Description: The Smart-seq2 Multi-Sample Pipeline is a wrapper around the Smart-seq2 Single Sample pipeline. It is developed by the Data Coordination Platform of the Human Cell Atlas to process single-cell RNAseq (scRNAseq) data generated by Smart-seq2 assays. The workflow processes multiple cells by importing and running the Smart-seq2 Single Sample workflow for each individual cell and then merging the resulting output matrices into a single cell-by-gene matrix that contains raw counts and TPMs for all cells.
Resource Type: data processing software, software resource, software application
Keywords: Single cell data, Smart seq2 technology, scRNAseq data, Smart-seq2 assay data, data processing
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