URL: https://github.com/brentp/peddy
Proper Citation: peddy (RRID:SCR_017287)
Description: Software package that evaluates correspondence between stated sexes, relationships, and ancestries in pedigree file and those inferred from genotypes in VCF file resulting from human whole genome sequencing or whole exome sequencing studies. Facilitates both automated and interactive, visual detection of sample swaps, poor sequencing quality, and other indicators of sample problems.
Resource Type: software resource, data processing software, software application, data analytics software, data analysis software
Defining Citation: PMID:28190455
Keywords: sex, relation, ancestry, evaluate, pedigree, VCF file, genome, sequencing, exome, error, genotype
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