URL: https://sanger-pathogens.github.io/gubbins/
Proper Citation: Gubbins (RRID:SCR_016131)
Description: Software application as an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. It is used for phylogenetic analysis of genome sequences and generating highly accurate reconstructions under realistic models of short-term bacterial evolution.
Synonyms: Gubbins: Genealogies Unbiased By recomBinations In Nucleotide Sequences
Resource Type: data analysis software, software application, sequence analysis software, data processing software, software resource
Defining Citation: PMID:25414349
Keywords: rapid, phylogenetic, analysis, large, sample, recombinant, bacteria, whole, genome, sequence, loci, elevated, densities, base, substitiution, mutatiion, outside, region, evolution, alignment
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