URL: https://bitbucket.org/vboza/deepnano
Proper Citation: DeepNano (RRID:SCR_016070)
Description: Software for an alternative basecaller for DNA base calling in the portable Oxford Nanopore MinION sequencing device, based on deep recurrent neural networks. Used to improve base calling accuracy and reduce sequencing error rate.
Synonyms: DeepNano: Deep recurrent neural networks for base calling in MinION nanopore reads, DeepNano: alternative basecaller for MinION reads
Resource Type: data analysis software, data processing software, sequence analysis software, software application, software resource
Defining Citation: PMID:28582401
Keywords: DNA, basecaller, Oxford Nanopore MinON read, sequencing, device, deep, recurrent, neural, network, accuracy, reduce, error
Funding: NVIDIA Corporation ; Slovak Research and Development Agency APVV-14-0253; VEGA 1/0684/16 (BB); VEGA 1/0719/14 (TV)
Availability: Free, Available for download
Resource Name: DeepNano
Resource ID: SCR_016070
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
