URL: http://abacas.sourceforge.net
Proper Citation: ABACAS (RRID:SCR_015852)
Description: Software that contiguates (align, order, orientate), visualizes and designs primers to close gaps on shotgun assembled contigs based on a reference sequence. ABACAS finds alignment positions and identifies syntenies of assembled contigs against the reference, then generates a pseudomolecule taking overlapping contigs and gaps into account.
Abbreviations: ABACAS
Synonyms: ABACAS: Algorithm Based Automatic Contiguation of Assembled Sequences, Algorithm Based Automatic Contiguation of Assembled Sequences (ABACAS), Algorithm Based Automatic Contiguation of Assembled Sequences
Resource Type: software application, software resource
Keywords: contiguation, primer, shotgun assembled contig, reference sequence, assembled sequence
Funding: European Union LSHP-LT-2004-503578; Wellcome Trust Sanger Institute
Availability: Free, Available for download
Resource Name: ABACAS
Resource ID: SCR_015852
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
