URL: https://hive.biochemistry.gwu.edu/tools/bioxpress/
Proper Citation: BioXpress (RRID:SCR_014191)
Description: BioXpress is a gene expression and cancer association database in which the expression levels are mapped to genes using RNA-seq data obtained from The Cancer Genome Atlas, International Cancer Genome Consortium, Expression Atlas and publications. BioXpress can be searched by gene name or cancer type. To search the database by gene name, select the appropriate identifier type from the dropdown menu and type in the corresponding identifier in the adjacent text box. The results are computed and presented to the user with information such as variable expression levels and tumor expression. To search by cancer type, select the desired type from the dropdown menu, such as "Cancer Type", "Significant", "Expression", "Adjusted p-value" and "p-value". Results are shown in a graph displaying the top 10 differentially expressed genes for the specified cancer type in terms of the frequency of significant altered expression between the tumor and normal pairs.
Resource Type: database, data or information resource
Defining Citation: DOI:10.1093/database/bav019
Keywords: rnaseq, differential expression, pan-cancer analysis, database
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