URL: https://code.google.com/p/hlaforest/
Proper Citation: HLAforest (RRID:SCR_012146)
Description: Software that predicts HLA haplotype by hierarchically weighting reads and using an iterative, greedy, top down pruning technique. HLAforest uses BioPerl to read in FASTA files. Alignments use Bow tie, although any alignment tool can be used to generate SAM alignments for use as input to HLAforest.
Resource Type: software resource
Defining Citation: PMID:23840783
Keywords: standalone software, perl
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