URL: https://code.google.com/p/mp-est/
Proper Citation: MP-EST (RRID:SCR_012145)
Description: Software that can consistently estimate the topology and branch lengths (in coalescent units) of the species tree. Although the pseudo-likelihood is derived from coalescent theory, and assumes no gene flow or horizontal gene transfer (HGT), the MP-EST method is robust to a small amount of HGT in the dataset. In addition, increasing the number of genes does not increase the computational time substantially. The MP-EST method is fast for analyzing datasets that involve a large number of genes but a moderate number of species.
Synonyms: Maximum Pseudo-likelihood Estimate of the Species Tree (MP-EST), Maximum Pseudo-likelihood for Estimating Species Trees
Resource Type: software resource
Defining Citation: PMID:20937096
Keywords: standalone software, web app
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