URL: http://biome.ewha.ac.kr:8080/GSEAWebApp/
Proper Citation: GARNET (RRID:SCR_012033)
Description: An integrative platform for diverse types of gene set analysis with annotation network navigation. It includes tools for statistical analysis, visualization of annotation relationships, retrieval of genes from annotation database, and set operation for gene sets. In an effort to allow access to a full spectrum of amassed biological knowledge, they have integrated a variety of annotation data that include the GO, domain, disease, drug, chromosomal location, and custom-defined annotations. Diverse types of molecular networks (pathways, transcription and microRNA regulations, protein-protein interaction) are also included. The pair-wise relationship between annotation gene sets was calculated using kappa statistics. GARNET consists of three modules--gene set manager, gene set analysis and gene set retrieval, which are tightly integrated to provide virtually automatic analysis for gene sets. A dedicated viewer for annotation network has been developed to facilitate exploration of the related annotations.
Abbreviations: GARNET
Synonyms: Gene Annotation Relationship NEtwork Tools
Resource Type: production service resource, service resource, analysis service resource, data analysis service
Defining Citation: PMID:21342555
Keywords: statistical analysis, visualization, annotation, gene
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