URL: http://bioinfo-out.curie.fr/projects/snp_gap/
Proper Citation: Genome Alteration Print (RRID:SCR_012016)
Description: Software for automatic detection of absolute segmental copy numbers and genotype status in complex cancer genome profiles measured by single-nucleotide polymorphism (SNP) arrays. The method is based on pattern recognition of segmented and smoothed copy number and allelic imbalance profiles. The method performs well even for poor-quality data, low tumor content, and highly rearranged tumor genomes.
Abbreviations: GAP
Synonyms: Genome Alteration Print (GAP): Mining complex cancer genomic profiles
Resource Type: software resource
Defining Citation: PMID:19903341
Keywords: genome, segmental copy number, genotype, genome profile, copy number, single-nucleotide polymorphism, array
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