Proper Citation: HOCTAR (RRID:SCR_010842)
Description: Database serving as a tool for microRNA target prediction. The HOCTAR procedure is based on the integration of expression profiling and sequence-based miRNA target recognition softwares. HOCTAR database (db) is the first and unique database to use transcriptomic data to score putative miRNA targets looking at the expression behaviour of their host genes, and it includes and re-analyzes all miRNA target predictions generated by softwares such as miRanda, TargetScan and PicTar. The HOCTARdb contains the prediction target lists for 290 human intragenic miRNAs and also provides tentative assignments of miRNA function based on Gene Ontology analyses of their predicted targets. There are two ways to interrogate HOCTARdb: (i) by selecting a miRNA using either an alphabetically sorted pull-down menu in the microRNA query, or (ii) by typing a target gene symbol (HUGO Gene Name-approved) in the Target Gene Name query.
Abbreviations: HOCTAR
Synonyms: Host gene Opposite Correlated TARgets, HOCTARdb, HOCTAR database
Resource Type: data or information resource, database
Defining Citation: PMID:21435384, PMID:19088304
Keywords: microrna, target prediction.
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