URL: http://www.ebi.ac.uk/sbo/
Proper Citation: SBO (RRID:SCR_006753)
Description: A set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modeling. The ontology consists of seven orthogonal vocabularies defining: the roles of reaction participants (eg. substrate), quantitative parameters (eg. Michaelis constant), a precise classification of mathematical expressions that describe the system (eg. mass action rate law), the modeling framework used (eg. logical framework), and a branch each to describe entity (eg. macromolecule) and interaction (eg. process) types, and a branch to define the different types of metadata that may be present within a model. SBO terms can be used to introduce a layer of semantic information into the standard description of a model, or to annotate the results of biochemical experiments in order to facilitate their efficient reuse. SBO is an Open Biomedical Ontologies (OBO) candidate ontology, and is free for use. A programmatic access to the content of the Systems Biology Ontology is provided by Web Services.
Abbreviations: SBO
Synonyms: Systems Biology Ontology
Resource Type: data or information resource, database, controlled vocabulary, ontology
Defining Citation: PMID:17118155
Keywords: systems biology, computational modeling, web service, obo, gold standard
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