URL: http://snap.cs.berkeley.edu/
Proper Citation: Scalable Nucleotide Alignment Program (RRID:SCR_005501)
Description: A sequence aligner software program that is 10-100x faster and simultaneously more accurate than existing tools like BWA, Bowtie2 and SOAP2. It runs on commodity x86 processors, and supports a rich error model that lets it cheaply match reads with more differences from the reference than other tools. This gives SNAP up to 2x lower error rates than existing tools and lets it match larger mutations that they may miss. SNAP also natively reads BAM, FASTQ, or gzipped FASTQ, and natively writes SAM or BAM, with built-in sorting, duplicate marking, and BAM indexing.
Abbreviations: SNAP
Synonyms: SNAP - Scalable Nucleotide Alignment Program
Resource Type: software resource
Keywords: windows, linux, os x
Availability: Apache License, 2, Acknowledgement requested
Resource Name: Scalable Nucleotide Alignment Program
Resource ID: SCR_005501
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
