URL: http://cistrome.org/BETA/
Proper Citation: Binding and Expression Target Analysis (RRID:SCR_005396)
Description: A software package that integrates ChIP-seq of transcription factors or chromatin regulators with differential gene expression data to infer direct target genes. BETA has three functions: (1) to predict whether the factor has activating or repressive function; (2) to infer the factor''''s target genes; and (3) to identify the motif of the factor and its collaborators which might modulate the factor''''s activating or repressive function. BETA requires ~2GB RAM and 1h for the whole procedure. BETA may run on the web server at Cistrome or may be downloaded.
Abbreviations: BETA
Synonyms: BETA - Binding and Expression Target Analysis
Resource Type: software resource, analysis service resource, service resource, production service resource, data analysis service
Defining Citation: PMID:24263090
Keywords: transcription factor, chromatin regulator, transcriptome, chip-seq, cistrome, gene expression, target gene, motif, differential gene expression
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