URL: http://cgs.csail.mit.edu/gem/
Proper Citation: GEM (RRID:SCR_005339)
Description: Java software for studying protein-DNA interaction using ChIP-seq / ChIP-exo data. It links binding event discovery and motif discovery with positional priors in the context of a generative probabilistic model of ChIP data and genome sequence, resolves ChIP data into explanatory motifs and binding events at unsurpassed spatial resolution. GEM reciprocally improves motif discovery using binding event locations, and binding event predictions using discovered motifs.
Abbreviations: GEM
Synonyms: Genome wide Event finding and Motif discovery, GEM: ChIP-Seq and ChIP-exo analysis tool
Resource Type: software resource
Defining Citation: PMID:22912568
Keywords: chip-seq, chip-exo, genome, event, motif, protein-dna interaction, java, transcription factor, genome sequence, motif discovery, binding event calling
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