URL: http://swissregulon.unibas.ch/fcgi/sr/swissregulon
Proper Citation: SwissRegulon (RRID:SCR_005333)
Description: A database of genome-wide annotations of regulatory sites. The predictions are based on Bayesian probabilistic analysis of a combination of input information including: * Experimentally determined binding sites reported in the literature. * Known sequence-specificities of transcription factors. * ChIP-chip and ChIP-seq data. * Alignments of orthologous non-coding regions. Predictions were made using the PhyloGibbs, MotEvo, IRUS and ISMARA algorithms developed in their group, depending on the data available for each organism. Annotations can be viewed in a Gbrowse genome browser and can also be downloaded in flat file format.
Abbreviations: SwissRegulon
Synonyms: SwissRegulon Database
Resource Type: data or information resource, database
Defining Citation: PMID:23180783, PMID:17130146
Keywords: genome, binding site, transcription factor, genome-wide annotation, annotation, chip-chip, chip-seq, non-coding region, promoter, motif, transcript, regulatory motif, genome browser, FASEB list
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