URL: http://code.google.com/p/rseqc/
Proper Citation: RSeQC (RRID:SCR_005275)
Description: Software package to comprehensively evaluate different aspects of RNA-seq experiments, such as sequence quality, GC bias, polymerase chain reaction bias, nucleotide composition bias, sequencing depth, strand specificity, coverage uniformity and read distribution over the genome structure. RSeQC takes both SAM and BAM files as input, which can be produced by most RNA-seq mapping tools as well as BED files, which are widely used for gene models.
Abbreviations: RSeQC
Synonyms: rseqc - RNA-seq quality control package
Resource Type: sequence analysis software, software resource, data analysis software, software application, data processing software
Defining Citation: PMID:22743226
Keywords: python, qc, rna-seq, high throughput sequencing
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