URL: http://www.biomedcentral.com/1471-2105/13/189
Proper Citation: AGORA (RRID:SCR_005070)
Description: An algorithm to use optical map information directly within the de Bruijn graph framework to help produce an accurate assembly of a genome that is consistent with the optical map information provided. AGORA takes as input two data structures: OpMap ? an ordered list of fragment sizes representing the optical map; and Edges ? a list of de Bruijn graph edges with their corresponding sequences.
Abbreviations: AGORA
Synonyms: Assembly Guided by Optical Restriction Alignment
Resource Type: software resource
Defining Citation: PMID:22856673
Keywords: genome assembly, genome, reconstruction
Resource Name: AGORA
Resource ID: SCR_005070
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
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