URL: http://www.biomedcentral.com/1471-2105/13/189
Proper Citation: AGORA (RRID:SCR_005070)
Description: An algorithm to use optical map information directly within the de Bruijn graph framework to help produce an accurate assembly of a genome that is consistent with the optical map information provided. AGORA takes as input two data structures: OpMap ? an ordered list of fragment sizes representing the optical map; and Edges ? a list of de Bruijn graph edges with their corresponding sequences.
Abbreviations: AGORA
Synonyms: Assembly Guided by Optical Restriction Alignment
Resource Type: software resource
Defining Citation: PMID:22856673
Keywords: genome assembly, genome, reconstruction
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