URL: http://sourceforge.net/apps/mediawiki/amos/index.php?title=Bambus2
Proper Citation: Bambus (RRID:SCR_005068)
Description: Software for scaffolding to address some of the challenges encountered when analyzing metagenomes. Scaffolding represents the task of ordering and orienting contigs by incorporating additional information about their relative placement along the genome. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the output from most current assemblers and provides the user with great flexibility in choosing the scaffolding parameters. In particular, Bambus is able to accept contig linking data other than specified by mate-pairs. Such sources of information include alignment to a reference genome (Bambus can directly use the output of MUMmer), physical mapping data, or information about gene synteny.
Abbreviations: Bambus
Synonyms: Bambus 2, Bambus 2.0
Resource Type: software resource
Defining Citation: PMID:21926123
Keywords: scaffolding
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