URL: http://www.bioinfo.tsinghua.edu.cn/dbsubloc.html
Proper Citation: DBSubLoc - Database of protein Subcellular Localization (RRID:SCR_002339)
Description: A database of protein subcellular localization containing proteins from primary protein database SWISS-PROT and PIR. By collecting the subcellular localization annotation, these information are classified and categorized by cross references to taxonomies and Gene Ontology database. Annotations were taken from primary protein databases, model organism genome projects and literature texts, and then were analyzed to dig out the subcellular localization features of the proteins. The proteins are also classified into different categories. Based on sequence alignment, nonredundant subsets of the database have been built, which may provide useful information for subcellular localization prediction. The database now contains >60 000 protein sequences including 30 000 protein sequences in the nonredundant data sets. Online download, SOAP server, Blast tools and prediction services are also available.
Abbreviations: DbSubLoc
Resource Type: software resource, service resource, analysis service resource, data access protocol, data or information resource, database, production service resource, data analysis service, web service
Defining Citation: PMID:14681374
Keywords: protein, protein database, protein subcellular localization, blast, prediction, subcellular
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