URL: http://sammeth.net/confluence/display/ASTA/2+-+Download
Proper Citation: AStalavista (RRID:SCR_001815)
Description: Tool that extracts and displays alternative splicing (AS) events from a given genomic annotation of exon-intron gene coordinates. By comparing all given transcripts, it detects the variations in their splicing structure and identifies all AS events (like exon skipping, alternate donor, etc) by assigning to each of them an AS code. It provides a visual summary of the AS landscape in the analyzed dataset, the possibility to browse the results on the UCSC website or to download them in GTF or ASTA format. You can use AStalavista for any genome by providing your own annotation set, the identifier of your gene(s) of interest, or analyze the AS landscape of reference annotation datasets like Gencode, RefSeq, Ensembl, FlyBase, etc.
Abbreviations: AStalavista
Synonyms: Alternative Splicing transcriptional landscape visualization tool
Resource Type: analysis service resource, software resource, data analysis service, production service resource, service resource
Defining Citation: PMID:17485470
Keywords: alternative splicing event, alternative splicing, visualization, genome, transcript
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