URL: http://support.illumina.com/sequencing/sequencing_software/casava.html
Proper Citation: CASAVA (RRID:SCR_001802)
Description: Software package that creates genomic builds, calls SNPs, detects indels, and counts reads from data generated from one or more sequencing runs. In addition, CASAVA automatically generates a range of statistics, such as mean depth and percentage chromosome coverage, to enable comparison with previous builds or other samples. CASAVA analyzes sequencing reads in three stages: * FASTQ file generation and demultiplexing * Alignment to a reference genome * Variant detection and counting
Abbreviations: CASAVA
Synonyms: Consensus Assessment of Sequence And VAriation
Resource Type: software resource, software application
Keywords: gene, genetic, genomic, linux
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