URL: https://cells-test.gi.ucsc.edu/cytoverse/
Proper Citation: CytoVerse (RRID:SCR_028854)
Description: Web application to map single-cell RNA data into AI foundation model spaces. Lets search millions of reference cells and view cell types locally without uploading private data or needing powerful cloud servers. Using ONNX model deployment and compressed IVFPQ indexing, it annotates local datasets against a 23-million-cell reference without server computation, installation, or data upload, and shares embeddings as lightweight files, enabling private, interactive, and collaborative single-cell analysis.
Resource Type: data access protocol, data analysis software, data processing software, data visualization software, software application, software resource, web service
Defining Citation: PMID:41659670
Keywords: single-cell RNA-seq, foundation models, browser based analysis, WebAssembly, ONNX, scFM, approximate nearest neighbors, latent space collaboration, data privacy,
Funding: Brain and Behavior Research Foundation ; California Institute for Regenerative Medicine ; NHGRI RM1HG011543; NIMH U24MH132628; NINDS U24NS146314; NSF ; University of California Office of the President
Availability: Free, Available for download, Freely available
Resource Name: CytoVerse
Resource ID: SCR_028854
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
