URL: https://github.com/omagebright/MPLID
Proper Citation: Membrane Protein-Lipid Interaction Database (RRID:SCR_028506)
Description: Database for residue-level membrane protein-lipid contact annotations derived from experimentally determined Protein Data Bank structures. Includes automated Python pipeline for identifying lipid-containing PDB structures, calculating all-atom heavy-atom residue-lipid contacts using a 4.0 Angstrom distance cutoff, generating cluster-aware train, validation, and test splits, and producing documented dataset files for machine learning and structural bioinformatics. The dataset is deposited on Zenodo under CC0, while the code is released on GitHub under the MIT license. Contains large-scale experimentally-validated dataset of residue-level protein-lipid contacts from membrane protein structures.
Abbreviations: MPLID
Synonyms: MPLID: Membrane Protein-Lipid Interaction Database
Resource Type: data or information resource, database, software resource, source code
Keywords: large-scale experimentally-validated dataset, residue-level protein-lipid contacts, membrane protein structures,
Availability: Free, Available for download, Freely available
Resource Name: Membrane Protein-Lipid Interaction Database
Resource ID: SCR_028506
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
