URL: https://github.com/omagebright/MPLID
Proper Citation: Membrane Protein-Lipid Interaction Database (RRID:SCR_028506)
Description: Database for residue-level membrane protein-lipid contact annotations derived from experimentally determined Protein Data Bank structures. Includes automated Python pipeline for identifying lipid-containing PDB structures, calculating all-atom heavy-atom residue-lipid contacts using a 4.0 Angstrom distance cutoff, generating cluster-aware train, validation, and test splits, and producing documented dataset files for machine learning and structural bioinformatics. The dataset is deposited on Zenodo under CC0, while the code is released on GitHub under the MIT license. Contains large-scale experimentally-validated dataset of residue-level protein-lipid contacts from membrane protein structures.
Abbreviations: MPLID
Synonyms: MPLID: Membrane Protein-Lipid Interaction Database
Resource Type: data or information resource, database, source code, software resource
Keywords: large-scale experimentally-validated dataset, residue-level protein-lipid contacts, membrane protein structures,
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