URL: https://github.com/sanger-tol/MicroFinder
Proper Citation: MicroFinder (RRID:SCR_028196)
Description: Software pipeline to aid the curation of bird genome assemblies by identifying putative microchromosome scaffolds and moving them to start of the genome assembly FASTA file. Hi-C contact map can then be made using the MicroFinder-ordered assembly file for downstream manual curation. Conserved gene-set mapping and assembly ordering for manual curation of bird microchromosomes. Order FASTA file by microchromosome specific genes.
Resource Type: software resource, software toolkit
Defining Citation: DOI:10.1101/2025.05.09.653066
Keywords: Conserved gene-set mapping and assembly, ordering for manual curation of bird microchromosomes, gene-set mapping, assembly ordering, manual curation, bird microchromosomes, order FASTA file, microchromosome specific genes,
Availability: Free, Available for download, Freely available
Resource Name: MicroFinder
Resource ID: SCR_028196
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
