URL: https://github.com/broadinstitute/DropSift
Proper Citation: DropSift (RRID:SCR_028040)
Description: Software package as nucleus caller for single-nucleus RNA sequencing data. Distinguishes between nuclei and empty droplets by combining summary metrics of cell barcodes—such as total UMI counts, fraction of intronic reads, and percentage of mitochondrial reads. It also incorporates gene expression to learn signatures characteristic of empty droplets.
Resource Type: software resource, software toolkit, source code
Keywords: Distinguishes between nuclei and empty droplets, nucleus caller, single-nucleus RNA sequencing data,
Availability: Free, Available for download, Freely available
Resource Name: DropSift
Resource ID: SCR_028040
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
