URL: https://gitlab.com/uniluxembourg/lcsb/systems-ecology/pathofact2
Proper Citation: PathoFact2 (RRID:SCR_027650)
Description: Software integrative pipeline for antimicrobial resistance genes, virulence factors, toxins, and biosynthetic gene clusters prediction in metagenomes. Used for predicting microbiome-based pathogenicity and resistance to better understand and address challenges posed by antimicrobial resistance and infectious diseases.
Synonyms: PathoFact 2.0
Resource Type: software application, software resource
Defining Citation: DOI:10.1101/2024.12.09.627531
Keywords: predicting microbiome-based pathogeni, antimicrobial resistance genes, virulence factors, toxin-related proteins, biosynthetic gene clusters, metagenomes
Funding: European Research Council ERC-CoG 863664; Luxembourg Government CoVaLux program; Luxembourg National Research Fund FNR CORE/23/BM/15886415; Luxembourg National Research Fund FNR CORE/23/BM/15886415; Pélican grant from the Mie and Pierre Hippert-Faber Pélican Foundation
Availability: Free, Available for download, Freely available
Resource Name: PathoFact2
Resource ID: SCR_027650
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Source: SciCrunch Registry (RRID:SCR_005400)
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